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First off, if you haven't already, I might suggest enabling greylisting, which can make a huge difference on the amount of spam getting through. You can do that in Email Messages -> Email Greylisting.
Next -- as far as your second domain is concerned, I'd verify in the email headers of the emails being received have a X-Spam-Status, which shows that it's being processed by SpamAssassin.
You can also use Usermin to train SpamAssassin as to what email messages are spam and ham.
Lastly, by default, the mail directory is ~/Maildir -- and spam would go in ~/Maildir/.spam.
If you aren't seeing spam in the spam folder, try setting it to that, rather than the "~/mail/spam" you had mentioned.
-Eric
Thank you for your reply Eric!
-- Next -- as far as your second domain is concerned, I'd verify in the email headers of the emails being received have a X-Spam-Status, which shows that it's being processed by SpamAssassin.
How can I do that ?
You can also use Usermin to train SpamAssassin as to what email messages are spam and ham.
By adding filters ?
The X-Spam-Status is a header, you'd look in the email headers to do that (how, exactly, depends on your email client).
For Usermin -- there's buttons when you're viewing your mail, for "Spam" and "Ham".
-Eric
Thanks Eric!!