Using Cloudmin for physical servers, I added a new VPS that had SSH only on it.
I used the install virtualmin pro routine from the cloudmin server, entering my license info.
Cloudmin installed virtualmin pro fine, BUT when I went to the virtuamin server and tried to install plugins like wbm_virtualmin_git, yum was unable to find those plugins for install from the command line.
I did not check to see if a virtualmin.repo file had been created, or how it was different from the script.
Using the install script from my account, yum has no problem finding those plugins.
I have already wiped and reinstalled that vps from command line, so I can't diagnose it using that machine again right now.